Question: Somaticsniper Fpfilter Perl Script
0
gravatar for a.bahraini88
6.5 years ago by
a.bahraini880 wrote:

Hi,

I'm running fpfilter.pl step as part of the somatic-sniper workflow on my data. Actually, no input is returned for the varaints which pass the parameters. It only returns me some stats. Could you please let me know how I can write the output?

Thanks

• 1.5k views
ADD COMMENTlink modified 3.0 years ago by Biostar ♦♦ 20 • written 6.5 years ago by a.bahraini880
0
gravatar for ernfrid
6.5 years ago by
ernfrid380
Saint Louis
ernfrid380 wrote:

All of the filtering scripts in the SomaticSniper source code create named files by default. The fpfilter.pl will create an input_file.fp_pass file that you should look at after running the command (where input_file is the name of the file you passed in as the --snp-file argument).

ADD COMMENTlink modified 6.5 years ago • written 6.5 years ago by ernfrid380
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