Dataset Search: Rna-Seq And Affymetrix Hugene Arrays

Question

[polarise]

I'm looking for a dataset with precisely the above platforms (i.e. not Affymetrix HuEx or any other array type).

I am already aware of the following three datasets: GTEx project; Gene expression propionic patients, carriers, and controls; Vitamin D and Gene Expression (a SuperSeries with two SubSeries on GEO)

Anyone know of any other?

Thanks!!!

PK

Answer 1

[Sean Davis]

Does this work?

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6244

There are 708 datasets, according to GEO, that use GPL6244, your requested array platform.

[polarise]

You're right: GPL6244 is one of the platforms I requested. Thanks.

[polarise]

After scouring this long list I've found a potential dataset. Thanks.

[Sean Davis]

If you need more powerful search capabilities and you know SQL, you can try the GEOmetadb Bioconductor package.