If I want to compare two biological networks/graphs (as in graph theory) what are the best clustering methods and which method is to be chosen for comparison? Can anyone suggest a good review/article for the same?
This stack exchange thread has a good discussion on choosing a clustering method, see this paper for a benchmark test on clustering methods and you can read through this thread for a comparision of community detection algorithms in igraph library
You can use the tool 'CompNet' available at https://web.rniapps.net/compnet/
Publication link : https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1013-x
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