Comparison Of Biological Graphs/Networks
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8.1 years ago
tigeradab ▴ 60

If I want to compare two biological networks/graphs (as in graph theory) what are the best clustering methods and which method is to be chosen for comparison? Can anyone suggest a good review/article for the same?

graph clustering network • 2.8k views
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8.1 years ago
Sudeep ★ 1.6k

This stack exchange thread has a good discussion on choosing a clustering method, see this paper for a benchmark test on clustering methods and you can read through this thread for a comparision of community detection algorithms in igraph library

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2.9 years ago

You can use the tool 'CompNet' available at https://web.rniapps.net/compnet/

Publication link : https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1013-x

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