Hi! I would like to ask a probably naïve question.
I have a list of SNPs and I'm giving them a score based on their relation with a set of known genes. For instance, a user selects a list of genes of interest, and all the SNPs related to these genes get a high score.
I already have a simple mapping SNP-gene and it gives scores whether the gene is in the promoter region, in a exonic or intronic region and so on. But I would like to know if I can use haplotypic information.
Is it possible to get the haplotype where every SNP is located so that I can give a score to all the genes in the haplotype? If so, I would have an extra source of scoring.
Does this make sense to you?
Thanks a lot!