Question: Programs For Estimating Admixture Dates Using Genome-Wide Snp Data?
gravatar for Javier2013
6.5 years ago by
Javier201390 wrote:


This is a general question.

I wanted to what software programs are currently available for estimating admixture dates using genome-wide SNP data?

I was using ALDER and ROLLOFF, but since I want to date an admixture event from a close related population to my test population I do not get any significant result.

Thanks in advance.

snp • 1.8k views
ADD COMMENTlink modified 14 months ago by Biostar ♦♦ 20 • written 6.5 years ago by Javier201390
gravatar for Zev.Kronenberg
6.5 years ago by
United States
Zev.Kronenberg11k wrote:

I'm not being a jerk: ADMIXTURE , it is a real program :-).

I would suggest thinking about MAF filtering and how you want to thin your markers. In the case of admixture you really want quality over quantity. I would try running admixture before and after filtering. It is surprising how much the signals change.

ADD COMMENTlink modified 6.5 years ago • written 6.5 years ago by Zev.Kronenberg11k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1659 users visited in the last hour