Question: Software Programs For Estimating Effective Population Size (Ne) Using Genome-Wide Snp Data
0
gravatar for Javier2013
5.8 years ago by
Javier201390
UPF
Javier201390 wrote:

Hi everyone:

I wanted to know If any of you had any experience using any software program that can give effective population size estimates based on genome-wide SNP data.

Thank you.

Javier

population snp • 3.9k views
ADD COMMENTlink modified 5.8 years ago by jackuser1979860 • written 5.8 years ago by Javier201390
1
gravatar for jackuser1979
5.8 years ago by
jackuser1979860
US
jackuser1979860 wrote:

Try IMPUTE2 tool: It has option to calculate Effective size of the population.

There is also perl script is useful to find theta curve

For finding population mutation & recombination rate use mlRho tool and I think it has option to find effective size population also.

ADD COMMENTlink written 5.8 years ago by jackuser1979860

Hi @jackuser1970 I checked IMPUTE2 tool but I couldn't find an option to estimate Ne. I was trying to estima the population recombination rate using LDhat, but after that which software can I use to estimate Ne ???

ADD REPLYlink written 5.6 years ago by GabrielMontenegro530
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1281 users visited in the last hour