Question: How Pindel Find Out Long Inserted Sequence?
0
gravatar for bill-zt
5.4 years ago by
bill-zt40
bill-zt40 wrote:

the current version of pindel, v0.2.4, is able to find out and report long insertions. However its user manual didn't note about this. I want to know how it find it, because according to the split reads strategy, it seems impossible.

And according to http://seqanswers.com/forums/showthread.php?t=18083 (#8), using -z option can report the exact inserted sequence. Really?

pindel • 1.5k views
ADD COMMENTlink modified 5.4 years ago by liangkaiye250 • written 5.4 years ago by bill-zt40
0
gravatar for liangkaiye
5.4 years ago by
liangkaiye250
United States
liangkaiye250 wrote:

pindel uses kmer overlap to build a long fragment but this module is still being modified and unstable.

ADD COMMENTlink written 5.4 years ago by liangkaiye250

Thank you. And the -z option can report the exact inserted sequence, really? The user manual of pindel does not mention it.

ADD REPLYlink written 5.4 years ago by bill-zt40
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