Hi, I'm using the MAPP program for protein mutations analysis. This program needs phylogenetic tree from multiple sequence alignment.
For tree construction I used FastTree. It is the most fast tool I have ever tried. But there is little problem with the tree it generates.
Inside the tree occurs trifurcation (one parent - three children). But MAPP program needs only two children inside the tree (root trifurcation is OK).
Do you know how to reformat the tree without change his phylogenetic meaning? Or is there any option (code change) in FastTree to solve this?