Does anyone know how to download all GO annotations from a species (e.g. Homo sapiens) in Gene Ontology website? Thanks.
If you scroll down to Homo sapiens on http://www.geneontology.org/GO.downloads.annotations.shtml and click on "annotations" that should be it: http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.goa_human.gz?rev=HEAD
Thanks so much! So this is the complete dataset rather than slim GO?
Yes, it should be the complete list. The GO slims they offer are elsewhere at: http://www.geneontology.org/GO.slims.shtml
Got it. Thanks!
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