Question: Get Species Information From The Uniprot Ids
0
gravatar for mtyler.jason
6.1 years ago by
mtyler.jason110
mtyler.jason110 wrote:

Hi all,

I want to know about the species of the given protein using their uniprot ids. Is there any tool to do it?

protein • 2.6k views
ADD COMMENTlink modified 6.1 years ago by aheinzel110 • written 6.1 years ago by mtyler.jason110
2
gravatar for aheinzel
6.1 years ago by
aheinzel110
Austria
aheinzel110 wrote:

you can get this information from uniprot directly. off the top of my head, I can think of the following three options:

@REST: the following query

http://www.uniprot.org/uniprot/?format=tab&columns=id,organism&query=accession%3AP08646+OR+accession%3AP08645+OR+accession%3AP01119 retrieves organism information for the uniprot accessions P08646, P01119 and P08645 in tab seperated format. Just adapt the query argument "accession%3AP08646+OR+accession%3AP08645+OR+accession%3AP01119" to fit your needs

@batch retrieval service: Paste your uniprot accessions into the text field and hit the retrieve button. Afterwards, follow the link to UniProtKB. There (in the search result) you should see the individual entries matching your uniprot ids. Hit the customize link in the upper left part of the search result view remove all unwanted columns and click save. Finally, use the download link in the upper right corner to retrieve the information in you prefered Format.

ADD COMMENTlink written 6.1 years ago by aheinzel110
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1715 users visited in the last hour