Question: Contig-Kegg Mapping
1
gravatar for jackuser1979
5.2 years ago by
jackuser1979860
US
jackuser1979860 wrote:

I have done mapping using KEGG automatic annotation server (KAAS) with contig sequences by bi-directional best hit method. KEGG just gives list of pathways involved. I would like to know which contig id mapped to which pathway?.

kegg • 1.7k views
ADD COMMENTlink modified 5.2 years ago by Prakki Rama2.2k • written 5.2 years ago by jackuser1979860
1
gravatar for Prakki Rama
5.2 years ago by
Prakki Rama2.2k
Singapore
Prakki Rama2.2k wrote:

You need to check the query.ko (text) file when your KAAS completes the annotation. There you can find the contigs assigned with KO ID's.

ADD COMMENTlink modified 5.2 years ago • written 5.2 years ago by Prakki Rama2.2k
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