Question: How Do I Extract Physical Interactions From A Kegg Pathway For Cytoscape?
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gravatar for ilovebrettlee
5.2 years ago by
ilovebrettlee0 wrote:

Hey! I'm new to cytoscape and I'm trying to create a subnetwork of genes involved in a pathway from KEGG. For example say http://www.genome.jp/kegg-bin/show_pathway?map=hsa05215&show_description=show To create a subnetwork in cytoscape I need a list of genes and the ones they physically interact with. I think it should be something like gene1 pp gene 4 gene 2 pp gene 5 gene 3 pp gene 7 and so on.. Is there anyway I can do this? or is there anyother way I can create the subnetwork

cytoscape • 1.7k views
ADD COMMENTlink modified 4.8 years ago by azimzadeh.jam.sadegh0 • written 5.2 years ago by ilovebrettlee0
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gravatar for azimzadeh.jam.sadegh
4.8 years ago by
Iran, Islamic Republic Of
azimzadeh.jam.sadegh0 wrote:

Try JEPETTO plugin in Cytoscape.

ADD COMMENTlink written 4.8 years ago by azimzadeh.jam.sadegh0
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