Question: How Do I Extract Physical Interactions From A Kegg Pathway For Cytoscape?
gravatar for ilovebrettlee
5.2 years ago by
ilovebrettlee0 wrote:

Hey! I'm new to cytoscape and I'm trying to create a subnetwork of genes involved in a pathway from KEGG. For example say To create a subnetwork in cytoscape I need a list of genes and the ones they physically interact with. I think it should be something like gene1 pp gene 4 gene 2 pp gene 5 gene 3 pp gene 7 and so on.. Is there anyway I can do this? or is there anyother way I can create the subnetwork

cytoscape • 1.7k views
ADD COMMENTlink modified 4.8 years ago by azimzadeh.jam.sadegh0 • written 5.2 years ago by ilovebrettlee0
gravatar for azimzadeh.jam.sadegh
4.8 years ago by
Iran, Islamic Republic Of
azimzadeh.jam.sadegh0 wrote:

Try JEPETTO plugin in Cytoscape.

ADD COMMENTlink written 4.8 years ago by azimzadeh.jam.sadegh0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1555 users visited in the last hour