How Do I Extract Physical Interactions From A Kegg Pathway For Cytoscape?

Question

[ilovebrettlee]

Hey! I'm new to cytoscape and I'm trying to create a subnetwork of genes involved in a pathway from KEGG. For example say http://www.genome.jp/kegg-bin/show_pathway?map=hsa05215&show_description=show To create a subnetwork in cytoscape I need a list of genes and the ones they physically interact with. I think it should be something like gene1 pp gene 4 gene 2 pp gene 5 gene 3 pp gene 7 and so on.. Is there anyway I can do this? or is there anyother way I can create the subnetwork

Answer 1

[azimzadeh.jam.sadegh]

Try JEPETTO plugin in Cytoscape.