How To Check Quality Of Snps

Question

[roll]

After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?

[alok.helix]

depth,Base Consensus ratio

Answer 1

[Zev.Kronenberg]

If you are calling variants in human you can look at the transition/transversion ratio. Number of private variants to shared variants....ect....