How To Check Quality Of Snps
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8.4 years ago
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After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?

snp qualitycontrol filter • 1.7k views
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depth,Base Consensus ratio

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8.4 years ago

If you are calling variants in human you can look at the transition/transversion ratio. Number of private variants to shared variants....ect....

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