Where To Find Pre-Computed Gene-To-Gene-Similarities Based On Gene Ontology (Go)
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7.2 years ago
Matthias ▴ 20

I need all possible gene-to-gene similarities in a reasonable time based on their associated GO identifiers. For all genes in Ensembl (about 60000), I have to calculate 60000 * 60000 / 2 similarities. Unfortunately this would take very long and I don't have much hardware ressources.

Is there a package or library containing all pre-computed similarities? Preferably similarities that were calculated with the Resnik measure in the R-GoSemSim package.

Cheers, Matthias

go gene ontology similarity • 1.3k views
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