From Phased File Formats To Vcf
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7.1 years ago
aleka ▴ 110

I need to convert phased data (map and haplotype file) from the Hapmap Phase II data to vcf files. Are you familiar with any software that makes the conversion?

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7.1 years ago
Zhaorong ★ 1.3k

You may want to take a look at the GATK VariantsToVCF tool: http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_variantutils_VariantsToVCF.html

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