I have 2 datasets that I will be using for my university project. The first dataset is relatively small and the other is much larger. Would it look odd in my university project to have a different threshold for the interaction probability for each of the data sets. The first one is smaller and I set the interaction probability to 0.5. Whereas the second dataset has several lists of proteins that are nearly 1000 proteins in length, so I will have to up the interaction probability threshold to 0.7 or 0.9 to make my Cytoscape/STRING network look less 'messy'. Is this bad practice?