Hi guys, I'm interested to make a Volcano plot and using different color i want to show which genes are UP and which are DOWN. To do this I need to use the logFc and FDR relative to ALL investigated regions and not just of DEGs. While logFC was found in in this way:
dbObj_region <- dba.analyze(dbObj_region, method=DBA_EDGER) b <- dbObj_region$contrasts all_site <- as.data.frame(b[]$edgeR$LRT$table)
I can't find FDR value of all sites. Can you help me??
Thanks a lot Giuseppe