DEG list turn into keggscape
1
0
Entering edit mode
27 days ago

hello everyone, I have a DEG list from rna-seq analysis and I want the degs to be represented in Kegg pathways, is there a way I can do that in cytoscape using Keggscape

Cytoscape RNA-Sequencing • 189 views
ADD COMMENT
1
Entering edit mode
22 days ago
Kozo ▴ 10

Hello, I am the developer of KEGGscape.

Can I ask you to show me an example of that DEG list? If I have that example, I might be able to answer you with some automation script(Python or R).

ADD COMMENT
0
Entering edit mode

Hello sir. Thanks for your response sir. I will add the pic of the deg list so that you can understand what I mean,I can send you the file directly via email, in case you need it. Hope to hear back from you

This is the excel file which has the upregulated and downregulated genes

ADD REPLY

Login before adding your answer.

Traffic: 2538 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6