Alternative Refence Allele in PLINK2 data files
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28 days ago

Hello,

In PLINK2 file formats, can we represent alternative allele as 0 and reference allele as 1. Or do we need to specify them using A C T or G?

As an example:

In .pvar file we have two columns name ALT and REF. Can these be denoted by using 0 and 1 ?

Thanks.

PLINK2 ALLELE • 94 views
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