How to use IDBA-UD to perform scaffolding on assembled contigs?
0
2
Entering edit mode
5 months ago
Rui ▴ 40

Hello everyone,

I came across some literature where people have used IDBA-UD to perform a scaffolding step on assembled contigs from other assemblers such as MEGAHIT.

I am thinking of using the following code

idba \ --read merged_raw_reads.fa \ --read_level_2 megahit_contigs.fa \ --out idba_scaffolds.fa

But I am not sure how it's supposed to be done from reading the IDBA-UD manual, could someone help with this? Much appreciated!

Rui

IDBA-UD assembly MEGAHIT scaffolds contigs • 170 views
ADD COMMENT

Login before adding your answer.

Traffic: 1962 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6