Question

heterozygosity

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3.0 years ago

mimiloz • 0

Hi, I have to calculate the heterozygosity of some individuals from a vcf file with R. How can I do?

heterozygosity • 721 views

ADD COMMENT • link updated 3.0 years ago by 4galaxy77 2.8k • written 3.0 years ago by mimiloz • 0

score 1 · Answer 1 · 2021-05-12

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Entering edit mode

3.0 years ago

4galaxy77 2.8k

Personally I prefer to use plink for such things as loading vcfs into memory in R can be painful.

plink --vcf in.vcf -het  --out my_samples

ADD COMMENT • link 3.0 years ago by 4galaxy77 2.8k