i am currently working on one of the gtdbtk first steps; align steps (identify, align and classify)
the following is the message i get (for doing 15 archaea genomes)
Traceback (most recent call last): File "/home/yschoi/anaconda3/envs/gtdbtk/lib/python3.8/site-packages/gtdbtk/__main__.py", line 509, in main gt_parser.parse_options(args) File "/home/yschoi/anaconda3/envs/gtdbtk/lib/python3.8/site-packages/gtdbtk/main.py", line 758, in parse_options self.align(options) File "/home/yschoi/anaconda3/envs/gtdbtk/lib/python3.8/site-packages/gtdbtk/main.py", line 334, in align markers.align(options.identify_dir, File "/home/yschoi/anaconda3/envs/gtdbtk/lib/python3.8/site-packages/gtdbtk/markers.py", line 405, in align self._write_marker_info(Config.AR122_MARKERS, ar122_marker_info_file) File "/home/yschoi/anaconda3/envs/gtdbtk/lib/python3.8/site-packages/gtdbtk/markers.py", line 353, in _write_marker_info with open(marker_path) as fp: FileNotFoundError: [Errno 2] No such file or directory: '/disk7/08.youngseok/hgt/c.GTDB-TK/GTDBTk-master/release202/markers/pfam/individual_hmms/PF01092.14.hmm'
and it seems like PF01092.14.hmm is an older version, which in my reference data
there is PF01092.20.hmm already.
i checked my config file, and the list of the files surely indicates PF01092.20.hmm to be used.
please help me with getting through this.