Data sources in ReactomePA

Question

[guitarlplay]

Hi guys,

I am working with the prepackaged data within the reactomePA package for gene enrichment analysis. I am comparing the results for a given list between the main Reactome website and using reactomePA in R. The hits within pathways are similar but not identical. My question is how I would go about finding which version of the Reactome Data is used within the package.

Thanks in advance.

[chjndyx]

Hi, in facts, I meet the same problem. When I used my gene set list, I found the results from ReactomePA package in clusterProfiler is similar to that in ReactomeFIPlugIn in cytoscape. However, the results from Reactome website (https://reactome.org/) are different from the above two.

Have you fix this problem? This question has bothered me for about two years! I speculate that the Reactome database may not be updated for a long time in R/cytoscape. And, it is updated every 3 months in the main Reactome website. Thanks! Carrie Chen E-mail: [e-mail]

[xuongsanxuatnoithathometalk]

thanks you very much!