the plot of drug-gene expression correlation
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6 months ago
Binghong ▴ 20

does anyone know how to make a plot(drug-gene expression correlation) like this ,thanks the plot of drug-gene expression correlation

correlation drug-gene expression • 444 views
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Need little more information. Maybe some reference or a little more explanation on the data type. Like what sort of data do you have for drugs and all.

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the plot is from https://pubmed.ncbi.nlm.nih.gov/29894693/ I want to replicate it ,the data are gene expression and PARPi IC50,maybe, but don't know use which tool(pacakage)

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Then this is not very hard.

You can use programming (Python: scipy.stats/R: cor function) to calculate the correlation between all the genes and PARPi IC50 values in your experiment. Sort the genes based on obtained correlation and plot them using plotting libraries (Python: matplotlib/R: ggplot2)

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oh thanks , I have a try

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