Incorrect Gene coordinates in GBFF File
0
0
Entering edit mode
7 weeks ago

The genes coordinate start with 1 to last base of the gene but not on the genome in the GBFF file of a newly sequence spp is there any way or tool to find the coordinates of genes using gbff file

eg. Gene1 of length 15000 bp the coordinate is 1-15000 Gene2 of lenght 1200pb the coordinate is 1-1200

Gene Coordinate GBFF • 219 views
ADD COMMENT
1
Entering edit mode

In case you have the sequence with the gbff, you could blast the sequence. Judging based on the very limited information, it seems to me like a pretty poor annotation, though.

ADD REPLY
0
Entering edit mode

There are about 2500 genes.

ADD REPLY
0
Entering edit mode

In principle for loops can handle this.

At least I don't know how to help you based on the very limited information you provide. Is this all you can disclose?

Did you do the annotation or did you get this from the NCBI? Do you even have the sequence for each gene? What do you expect from someone on this forum to help you?

ADD REPLY
0
Entering edit mode

I got the annotation from the NCBI and in the GBFF file sequence of each gene is there.

ADD REPLY

Login before adding your answer.

Traffic: 1356 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6