Hello I'm trying to use featureCounts for multiple files using python script
but python doesn't seem to be able to load featureCounts feature.
My python script is as below.
import os
import sys
number=['ss','sss',ssss','ssss']
for a in number:
os.system("featureCounts -a /home/biguser/systems_biology_2021/TA/gtf/gencode.v34.gtf -p -o /home/biguser/xxxxxxxxxxxx/xxxxxxxxxxx/organizedF/feaC/%s/%s_feaCon.txt /home/biguser/xxxxxxx/xxxxxxxx/organizedF/mappedControl/%s/%s_Aligned.sortedByCoord.out.bam -T 4"%(a,a,a,a))
And the result.
[biguser@xxxx-master finalP]$ python pyfeaCon.py
sh: featureCounts: command not found
sh: featureCounts: command not found
sh: featureCounts: command not found
sh: featureCounts: command not found
I'm pretty new to these stuff, so I was wondering if i could get any help
Thanks.
P.S How do I create a new line in this thing? Even if I 'enter' it just stays in a paragraph.
Markdown formatting rules are that 2 new line characters move to a new paragraph in the rendered markdown (like an HTML
<br>
tag) while one new line just moves the cursor in the raw markdown text (again, like in HTML).Thanks! I guess I didn't know much about web formats.