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2.9 years ago
amar.kant20422
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0
The genes coordinate start with 1 to last base of the gene but not on the genome in the GBFF file of a newly sequence spp is there any way or tool to find the coordinates of genes using gbff file
eg. Gene1 of length 15000 bp the coordinate is 1-15000 Gene2 of lenght 1200pb the coordinate is 1-1200
In case you have the sequence with the gbff, you could blast the sequence. Judging based on the very limited information, it seems to me like a pretty poor annotation, though.
There are about 2500 genes.
In principle for loops can handle this.
At least I don't know how to help you based on the very limited information you provide. Is this all you can disclose?
Did you do the annotation or did you get this from the NCBI? Do you even have the sequence for each gene? What do you expect from someone on this forum to help you?
I got the annotation from the NCBI and in the GBFF file sequence of each gene is there.