How to find allele frequency for a list of eQTLs based on finish/EUR population?
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21 months ago

Hello everyone,

I have recently been given the task to investigate eQTLs based on my transcriptomic data results. I had 87 significant genes for which I have found 8300 eQTLs in the GTEx website. Now I need to further filter this data to only contain eQTLs (SNPs) that have a MAF of at least 1% in the Finish population. I have been searching for days how to do this in R without any luck. If any one knows how to do this in R please help, I really don't want to end up having to do this one by one.

Thank you for your help in advance!

frequency eQTLs allele • 285 views

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