error related to predixcan
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3 months ago
rheab1230 ▴ 30

python $PXCN_TOOLS/Predict.py \ --model_db_path $MODELS/mashr_Whole_Blood.db \ --model_db_snp_key rsid \ --vcf_mode genotyped \ --vcf_genotypes $VCF_FILES/*.vcf \ --prediction_output $OUTPUT/GVDS_PrediXcan_Test_2021.txt

I am running predict.py code of predixcan. But I am getting some error: INFO - Had to reset logging handlers. Why? INFO - Running prediction INFO - Loading samples INFO - Unexpected error: b'/scratch/08259/GEUVADIS/vcf_files/GEUVADIS.chr5.genotype_updated21.vcf' if not valid bcf or vcf

PrediXcan TWAS MetaXcan SNP • 110 views
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