metascape or STRING
Entering edit mode
12 months ago

Dear all, just starting out here trying to grasp whether Metascape or STRING will help me with my research question and would really appreciate any advice : I want to see if the genes I am interested in = mygenelist have an important effect on/influence the differentially expressed genes (functionally/in any way) in a long gene list from a patient dataset which I have access to= datasetlist.

I want to know if mygenelist is a pathway of importance in the datasetlist and I am having alot of trouble deciding if I should use Metascape or STRING and have emailed helpdesk who say to ask a colleague but I don't have a bioinformatician available in our team/group/centre.

I tried STRING but think I need R to analyse further and don't know how to use R. I have a vague idea but not sure if I am doing things correctly. I have not got the grant/research time to learn R at present. please advise - is metascape preferable

Metascape STRING • 354 views

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