How to interpret scRNA-Seq cell dynamics from scVelo and CytoTrace results
0
0
Entering edit mode
8 weeks ago
gundalav ▴ 360

I have the following scRNaseq analysis done with scVelo and CytoTrace. enter image description here

My understanding is as follows:

  1. scVelo arrows lead from less differentiated (more stem cell) to more differentiated (e.g. granulocyte)
  2. CytoTrace brighter color is more differentiated (e.g. granulocyte) to darker color less differentiated (e.g. more esteem)

If so, the two results I have above are totally opposite. Is my interpretation correct? If so, why did it give the opposite result? Which one should we trust: scVelo or CytoTrace?

velocyto cell cytotrace rnaseq dynamics • 130 views
ADD COMMENT

Login before adding your answer.

Traffic: 1855 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6