Hello, I am very new to using R. I am trying to run aracne with RNA-seq data but I am unsure what format and file the data should be. Does anyone have any examples I could go off of and/or any script for running aracne using minet on R?
I have no experience with the minet package and I could not find any tutorial online but, the aracne function need a mutual information matrix (mim) which can be obtained with the build.mim function:
mim <- build.mim(syn.data,estimator="spearman") # syn.data is a data.frame containing gene expression data where columns contain genes and rows contain samples.
net <- aracne(mim)
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