when i use rgt-hint footprinting: it's error: Traceback (most recent call last): File "/home/data/vip55/miniconda3/lib/python3.8/configparser.py", line 789, in get value = d[option] File "/home/data/vip55/miniconda3/lib/python3.8/collections/__init__.py", line 898, in __getitem__ return self.__missing__(key) # support subclasses that define __missing__ File "/home/data/vip55/miniconda3/lib/python3.8/collections/__init__.py", line 890, in __missing__ raise KeyError(key) KeyError: 'gene_regions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/data/vip55/.local/bin/rgt-hint", line 8, in <module> sys.exit(main()) File "/home/data/vip55/.local/lib/python3.8/site-packages/rgt/HINT/Main.py", line 95, in main args.func(args) File "/home/data/vip55/.local/lib/python3.8/site-packages/rgt/HINT/Footprinting.py", line 110, in footprinting_run atac_seq(args) File "/home/data/vip55/.local/lib/python3.8/site-packages/rgt/HINT/Footprinting.py", line 134, in atac_seq genome_data = GenomeData(args.organism) File "/home/data/vip55/.local/lib/python3.8/site-packages/rgt/Util.py", line 93, in __init__ self.gene_regions = os.path.join(self.data_dir, self.config.get(organism, 'gene_regions')) File "/home/data/vip55/miniconda3/lib/python3.8/configparser.py", line 792, in get raise NoOptionError(option, section) configparser.NoOptionError: No option 'gene_regions' in section: 'mm10'
so, it'why?i have run python setupGenomicData.py --mm10 thank you!
