Histone marks enrichment analysis
0
0
Entering edit mode
3.3 years ago
gspirito ▴ 10

Hello everyone, here's my question:

I have a bed file of human genomic coordinates (hg19), and I would like to know whether ChIP-seq peaks for specific histone marks (such as those from ENCODE) are significantly more represented within my test regions compared to a background (another bed file). Is there any tool which would allow me to do that?

Thanks in advance.

RNA-Seq • 606 views
ADD COMMENT
0
Entering edit mode

Use bedtools intersect and count the overlapped regions for your two peak files (separately) against hg19 bed file.

ADD REPLY

Login before adding your answer.

Traffic: 1512 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6