ProcessMethylation450Data function of TCGA-Assembler causing subscript out of bound error
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2.7 years ago
Sheetal • 0

ProcessMethylation450Data function of TCGA-Assembler causing subscript out of bound error. However, if a take a little smaller subset of data, it is working fine.

list_methylation_450 <- ProcessMethylation450Data(inputFilePath = "./QuickStartExample/Part1_DownloadedData/TCGABRCA.txt", outputFileName = paste(sCancer, "methylation_450", sep = "__"), outputFileFolder = sPath2) Loading data. Process CpG sites corresponding to multiple genes, 16% done. Process CpG sites corresponding to multiple genes, 31% done. Process CpG sites corresponding to multiple genes, 46% done. Process CpG sites corresponding to multiple genes, 61% done. Process CpG sites corresponding to multiple genes, 76% done. Process CpG sites corresponding to multiple genes, 91% done. Error in [<-(*tmp*, AddIndex, , value = TempAddDes) : subscript out of bounds

Stuck up with this problem since last week. Looking forward d to assistance.

of ProcessMethylation450Data out subscript bounds • 469 views
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