Entering edit mode
3.0 years ago
mvk
▴
10
Hi,
I have a phased vcf file (generated by whatshap) of a diploid plant species. Each chromosome holds many separate phase blocks, and I want to connect these blocks/phases with Hi-C reads that I have from the same plant, in order to extend these phase blocks. Does anyone know if there is a pipeline which I can use to do this? I have searched a while, and until now still without a proper solution