Question

calculate dxy from vcf file

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2.7 years ago

ams2sa • 0

Would you recommend user friendly software to calculate dxy from VCF file?

Genome VCF dxy genetic • 1.4k views

ADD COMMENT • link updated 2.1 years ago by dthorbur ★ 1.9k • written 2.7 years ago by ams2sa • 0

score 0 · Answer 1 · 2022-03-29

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2.1 years ago

dthorbur ★ 1.9k

A little late, but I was also looking for a tool that can calculate Dxy. I found a few suggestions:

The R package PopGenome is likely the easiest. Follow Mark Ravinet's tutorial here.
Another newer tool appears to be pixy.

ADD COMMENT • link 2.1 years ago by dthorbur ★ 1.9k