SCENIC-openloom not working
0
1
Entering edit mode
2.6 years ago
Lekshmy ▴ 10

I have been trying to open a loom file which was produced by converting seurat object to loom.Using the following command:

loom <- open_loom(loomPath)

It is showing the following error :

Error in H5File.open(filename, mode, file_create_pl, file_access_pl) : 
  It is not possible to open the file. 
HDF5-API Errors:
    error #000: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5F.c in H5Fopen(): line 591: invalid file name
        class: HDF5
        major: Invalid arguments to routine
        minor: Bad value

I also tried to connect to loomfile.It is also showing sam error.

What is going wrong?

sc-rna SCENIC sequencing • 1.2k views
ADD COMMENT
0
Entering edit mode

Hello, Did you find a solution in the end?

ADD REPLY

Login before adding your answer.

Traffic: 1822 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6