SCENIC-openloom not working
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Entering edit mode
15 months ago
Lekshmy ▴ 10

I have been trying to open a loom file which was produced by converting seurat object to loom.Using the following command:

loom <- open_loom(loomPath)

It is showing the following error :

Error in H5File.open(filename, mode, file_create_pl, file_access_pl) : 
  It is not possible to open the file. 
HDF5-API Errors:
    error #000: c:/msys64/home/Jeroen/hdf5-1.8.16/src/H5F.c in H5Fopen(): line 591: invalid file name
        class: HDF5
        major: Invalid arguments to routine
        minor: Bad value

I also tried to connect to loomfile.It is also showing sam error.

What is going wrong?

sc-rna SCENIC sequencing • 604 views
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