Plotting chromosomes and target capture baits

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2.7 years ago

Begonia_pavonina ▴ 150

Hello everyone,

I wish to plot the location of hybridization of target capture baits on the chromosomes/scaffolds of a reference genome. I have a list of the baits, and their physical location on the reference genome. I have though to plot them using different R packages, as LinkageMap, or tools as GBrowse.

Ideally, I would like to use the same software used for this paper figure:

enter image description here (souce: https://www.researchgate.net/publication/7601585_A_new_contribution_to_the_integration_of_human_and_porcine_genome_maps_623_New_points_of_homology)

Unfortunately, the material and method part doesn't mention the tool used to make it.

Would anyone have recommendations?

plotting target_capture Hyb-Seq R • 753 views

ADD COMMENT • link 2.7 years ago by Begonia_pavonina ▴ 150

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Drawing Chromosome Ideograms With Data

ADD REPLY • link 2.7 years ago by Pierre Lindenbaum 161k

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Thank you for the link! I think chromPlot for Bioconductor will be ideal for it.

ADD REPLY • link 2.7 years ago by Begonia_pavonina ▴ 150

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