1001 Genome_SNP Matrix
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11 months ago
Nikwan • 0

Hi everyone,

I am learning to do GWAS analysis in Arabidopsis. I used some accessions from the 1135 list (1001 genomes project)for a GWAS experiment. I have some questions about the genotype data. I find there are several different genomes data including .vcf format and .hdf5 format. I selected the one named “1001_SNP_MATRIX.tar.gz”. So I want to ask if it is the right genotype data for GWAS analysis?. And also I have a problem converting the hdf5 format to STRUCTURE format. Does anybody know how to import this SNP matrix into the STRUCTURE software?. Look forward to your reply.

Thanks and Regards

STRUCTURE GWAS • 250 views

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