Omics data collection and merging of datasets from different studies
0
0
Entering edit mode
4 weeks ago
BioQueen ▴ 30

Hi! I'm going to do omics analysis on skin basal cell carcinoma. I'm currently trying to find publicly available data to use to make a data collection. I have looked after RNA-seq(high throughput) in GEO and found some studies like for example GSE156171, GSE128786 and GSE125285.

I'm going to combine datasets from different studies and I have a few question regarding this. 1) What do I have to think about when choosing datasets from GEO(like what type of high throughput RNA-seq can be combined, for example can I combine lncRNA with mRNA or what about miRNA and scRNA?) 2) And how do I combine different datasets from different studies? 3) Also do you recommend other databases?

Thanks!

analysis RNA-seq omics data transcriptomics • 104 views
ADD COMMENT

Login before adding your answer.

Traffic: 1677 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6