Quast Ouput
1
0
Entering edit mode
3.0 years ago
kishorssf91 ▴ 20

Hi, I have done a assembly statistics of a transcriptome assembly. I have found 102072 headers (">") and for that simply i thought that my assmbly has 102072 transcripts and i also considered one transcript as one contig. But when i run the quast i found in somewhere another number for contigs (47484). Hence i am confused how many contigs i have actually. Here, i am adding a picture for that for easy going.May be its a very basic question to most of the people but very important for my understanding. I hope i will receive help from you. Thanks. enter image description here

Contig Quast • 773 views
ADD COMMENT
0
Entering edit mode
2.3 years ago
Ying • 0

The "# contigs 47484" is based on contig of size >= 500 bp (see the first line of your screenshot). The "# contigs (>= 0 bp)" is the raw number of contigs (i.e. 102072 as you counted the headers).

ADD COMMENT

Login before adding your answer.

Traffic: 2002 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6