Best tools for calling structural variants from 2 assemblies?
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3.1 years ago
changxu.fan ▴ 70

Dear community,

I have the fasta files of 2 assemblies of the human genome (for example hg19 and hg38). What would be the best tools to call structural variants from these 2 fasta files? Most of the tools I know are designed to call variants using shot-gun sequencing reads...

Thanks in advance~

genetics variants genomics comparative population evolution • 513 views
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