Entering edit mode
2.9 years ago
optimistsso4co3
▴
110
I have multiple .vcf files for individuals (also have merged.vcf with all indivs.). I would like to predict each variants effect and then count variants with, e.g. IMPACT=HIGH.
Is there an automated tool to do such workflow for any kind of variable i wan't to compare between individuals?
This isn't something the VEP can do, but if you get your VEP output in VCF you could try VCFTools.