How to parse Illumina Bead Array Non-Normalized Output File in R
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7 months ago
Anthony • 0

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I am new to processing microarray data. I've been given this output file that is non-normalized and I would like to process the output.

The format is listed in the image above. There are 4 columns for each sample with SAMPLEID.AVG_Signal, SAMPLEID.Detection Pval, SAMPLEID.Avg_NBEADS, and SAMPLEID.BEAD_STDERR.

I've looked at a lot of posts on here but I haven't found posts that deal with this format. I am trying to process this data in R but I am unsure how.

Has anyone dealt with this before and what was your solution?

Thank you in advance.

lumi Illumina Bioconductor R Microarray • 163 views
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