Tools / Packages to assess allele specific methylation?
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Entering edit mode
7 weeks ago
Ankit ▴ 320

Hi everyone,

Are there any tools/packages/pipelines to assess allele specific methylation for human data?

I have used the following methods:

1. TrimGalore > Bismark Alignment > SNPsplit (Read split)> Bismark (methylation call)
or
2. TrimGalore > Bismark  Alignment  > Damefinder (Coverage/Meth on SNP)

But are other approaches available?

Thanks

allele specific SNP methylation Bismark • 140 views
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