Entering edit mode
2.5 years ago
noahpeeri
▴
10
I am using the UK Biobank Imputed Genetic data set and I was wondering if it is possible to use PLINK (or any other software) to view the actual calls for each SNP ranging in value from 0 --> 2 (including fractions)?
I have been using PLINK to output doseages as 0, 1, or 2, based upon the genotype hard-call probability threshold set by the software, but I want to obtain the actual integer value, rather than rely on hard-call probability thresholds.
Thank you -Noah
