We are using illumina Novaseq machines to do some sequencing and one of the files produced is a summary.csv file that has some info about the run that was sequenced. However, it is tough to figure out what units were used for a lot of the data and I can't find anything on illumina's site.
I have found a couple of similar reports on their site like these: 1 and 2 but they don't look like they have all of the fields in the summary.csv file that I have.
Edit: Can't post a well-formatted version of the summary.csv file on here for some reason so here is a pastebin link.
Edit2: To add some clarification. This file is created before demultiplexing (which is done using bcl2fastq). I believe it is created through illumina InterOp.
Can you clarify which
summary.csv
file are you referring to? Is it only for the demultiplexing or for downstream analysis and alignment (that could be done inBaseSpace
)? Currently there are two programs (bcl2fastq
andbcl-convert
) that can pre-process NovaSeq data. I don't think either produces asummary.csv
file on local servers (may be different onBaseSpace
).Sorry, added some clarification to the original post.