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2.5 years ago
s.labuschagne96
•
0
I am trying to run a GWAS in the command line with plink version 2, however when I run the following command plink2 --file hapmap1 I get the following error Error: Unrecognized flag ('--file')
I am trying to follow this tutorial https://zzz.bwh.harvard.edu/plink/tutorial.shtml#t6
Do I need to replace the file name in the command? (I have tried that but still get the same error)
I am unsure what to do as this is the first time I am using plink. I read somewhere that this command isnt compatible with plink2 but that was in 2017, so I am not sure how relevant that is now.
