Entering edit mode
2.5 years ago
Koreanraichu
•
0
Greetings.
While studying clustering analysis, I got a question which about Distance matrix.
In Biopython example code,
import numpy as np
import pandas as pd
from Bio.Cluster import distancematrix
data=np.array([[0, 1, 2, 3],[4, 5, 6, 7],[8, 9, 10, 11],[1, 2, 3, 4]])
matrix = distancematrix(data)
distances = distancematrix(data, dist='e')
print(distances)
This code's result is this:
[array([], dtype=float64), array([16.]), array([64., 16.]), array([ 1., 9., 49.])]
but how can I convert this array for
this matrix?